Plenary Session 9:00-10:00 in Eden Vale B Chair: Dr. Albert Reuther / MIT Lincoln Laboratory Keynote Speaker:  The Emerging Field of Performance Engineering Prof. Charles Leiserson (ACM/AAAS/SIAM Fellow - MIT CSAIL) Break (10:00-10:20) Resilient/Secure/Parallel Computing 1 10:20-12:00 in Eden Vale A1 - A2 Chair: Franz Franchetti / CMU Enabling Application Resilience through Programming Model based Fault Amelioration Saurabh Hukerikar, Pedro C. Diniz, Robert F. Lucas, University of Southern California Secure Architecture for Embedded Systems Michael Vai, Ben Nahill, Josh Kramer, Michael Geis, Dan Utin, David Whelihan, Roger Khazan, MIT Lincoln Laboratory DDR Memory Errors caused by Row Hammer Barbara Aichinger, FuturePlus Systems Corporation Invited Talk: Kickstarting Parallel Computing for the Masses Mr. Andreas Olofsson, CEO Adapteva Bioinformatics & Big Data 1 10:20-12:00 in Eden Vale C1 - C2 Chairs: Prof. John Quackenbush / Harvard Dept of Biostatistics & Prof. Wei Ding / Director - Knowledge Discovery Lab U.Mass Boston Invited Talk Apache Spark - In Memory Big Data Analytics Prof. Matei Zaharia. MIT CSAIL - Founder DataBricks Invited Talk Pfizer’s Computing Infrastructure for Molecular Design: use of HPC, the Cloud, and Service-Oriented Architecture Dr. Enoch Huang, Head of Computational Sciences Pfizer DAWN: Rapid Larse-Scale Protein Multiple Sequence Alignment and Conservation Analysis Darrell O. Ricke, Anna Shcherbina, MIT Lincoln Laboratory Invited Talk Discovering Disease Subtypes from Data Prof. Jennifer Dy, Dept of Electrical and Computer Engineering - Northeastern Invited Talk High Performance Computing in RNA Bioinformatics Prof. Peter Clote, Dept of Biology - Boston College Lunch; View Posters and Demos 12:00-1:00 in Emerson GPU 1 1:00-2:40 in Eden Vale A3 Chair: Dan Campbell / GTRI Sorting Sixteen Numbers Ming Ouyang, University of Massachusetts Boston GPU Acceleration of Iterative Physical Optics-based Electromagnetic Simulations Vivek Venugopalan, Cagatay Tokgoz, UTRC   An Energy-Efficient Abstraction for Simultaneous Breadth-First Searches Adam McLaughlin Jason Riedy David A. Bader, Georgia Institute of Technology Accelerating K-Means Clustering with Parallel Implementations and GPU computing Janki Bhimani, Miriam Leeser, Ningfang Mi, Northeastern University Resilient/Secure/Parallel Computing 2 1:00-2:40 in Eden Vale A1 - A2 Chair: David Cousins / BBN Atomic-Delayed Execution: A Concurrent Programming Model for Incomplete Graph-based Computations Pedro C. Diniz, University of Southern California Leakage Evaluation on Power Balance Countermeasure Against Side-Channel Attack on FPGAs Xin Fang, Pei Luo, Yunsi Fei, and Miriam Leeser, Northeastern University Parallel Vectorized Algebraic AES in MATLAB for Rapid Prototyping of Encrypted Sensor Processing Algorithms and Database Analytics Jeremy Kepner, Vijay Gadepally, Braden Hancock, Peter Michaleas, Elizabeth Michel, Mayank Varia, MIT Lincoln Laboratory Big Data Strategies for Data Center Infrastructure Management Using a 3D Gaming Platform Matthew Hubbell, Andrew Moran, William Arcand, David Bestor, Bill Bergeron, Chansup Byun, Vijay Gadepally, Peter Michaleas, Julie Mullen, Andrew Prout, Albert Reuther, Antonio Rosa, Charles Yee, Jeremy Kepner, MIT Lincoln Laboratory Bioinformatics & Big Data 2 1:00-2:40 in Eden Vale C1 - C2 Chair: Don Peck / General Electric D4M: Bringing Associative Arrays to Database Engines Vijay Gadepally, Jeremy Kepner, William Arcand, David Bestor, Bill Bergeron, Chansup Byun, Lauren Edwards, Matthew Hubbell, Peter Michaleas, Julie Mullen, Andrew Prout, Antonio Rosa, Charles Yee, Albert Reuther, MIT Lincoln Laboratory [Best Student Paper Finalist] Improving Big Data Visual Analytics with Interactive Virtual Reality Andrew Moran, MIT Dept. of Electrical Engineering and Computer Science, Vijay Gadepally, Matthew Hubbell, Jeremy Kepner, MIT Lincoln Laboratory   Biomedical Relation Extraction Using Stochastic Difference Equations Carl Tony Fakhry, Kourosh Zarringhalam, Ping Chen, University of Massachusetts Boston High Performance Computing of Gene Regulatory Networks using a Message-Passing Model Kimberly Glass, Brigham and Women’s Hospital and Harvard Medical School, John Quackenbush, Dana-Farber Cancer Institute and Harvard School of Public Health, Jeremy Kepner, MIT Lincoln Laboratory Lustre, Hadoop, Accumulo Jeremy Kepner, William Arcand, David Bestor, Bill Bergeron, Chansup Byun, Lauren Edwards, Vijay Gadepally, Matthew Hubbell, Peter Michaleas, Julie Mullen, Andrew Prout, Antonio Rosa, Charles Yee, Albert Reuther, MIT Lincoln Laboratory Break (2:40-3:00) GPU 2 3:00-4:40 in Eden Vale A3 Chair: Hahn Kim / Lockheed Martin Algorithm Flattening: Complete branch elimination for GPU requires a paradigm shift from CPU thinking Lucas Vespa, Alexander Bauman, Jenny Wells, University of Illinois Springfield GPU Implementation of Reverse Coordinate Conversion for Proteins Mahsa Bayati, Jaydeep P. Bardhan, Miriam Leeser, Northeastern Univ. Bisection and Twisted SVD on GPU Lu He, Yan Luo, University of Massachusetts Lowell, Rui Liu, Wake Forest University, Hengyong Yu, Yu Cao, University of Massachusetts Lowell, Xuzhou Chen, Fitchburg State University, Seung Woo Son, University of Massachusetts Lowell GPU Accelerated Geometric Multigrid Method: Comparison with Preconditioned Conjugate Gradient Iulian Stroia, Siemens SRL / Transilvania University of Braşov, Romania ; Lucian Itu*, Siemens SRL / Transilvania University of Braşov, Romania;  Cosmin Niţă, Siemens SRL / Transilvania University of Braşov, Romania; Laszlo Lazăr, Siemens SRL, Romania; Constantin Suciu, Transilvania University of Braşov / Siemens SRL, Romania Full-Chain Benchmarking for Open Architecture Airborne ISR Systems: A Case Study for GMTI Radar Applications Matthias Beebe, Matthew Alexander, Paul Foley, Denise Galejs, Stephen Mooney, Iulian Popescu, Kevin Rottman, Meryl Stav  MIT Lincoln Laboratory Resilient/Secure/Parallel Computing 3 3:00-4:40 in Eden Vale A1 - A2 Chair: Patrick Dreher / MIT Automatic Cluster Parallelization and Minimizing Communication via Selective Data Replication Sanket Tavarageri, Benoit Meister, Muthu Baskaran, Benoit Pradelle, Tom Henretty, Athanasios Konstantinidis, Ann Johnson, Richard Lethin Reservoir Labs Enabling On-Demand Database Computing with MIT SuperCloud Database Management System Andrew Prout, Jeremy Kepner, Peter Michaleas, William Arcand, David Bestor, Bill Bergeron, Chansup Byun, Lauren Edwards, Vijay Gadepally, Matthew Hubbell, Julie Mullen, Antonio Rosa, Charles Yee, Albert Reuther, MIT Lincoln Laboratory FIDES: Enhancing Trust in Reconfigurable Based Hardware Systems Effective Parallelization Strategies for Scalable, High Performance Radio Frequency Ray Tracing Devu  Manikantan Shila, UTRC, USA; Vivek Venugopalan*, UTRC, USA; Cameron  Patterson, Virginia Tech, USA Effective Parallelization Strategies for Scalable, High Performance Radio Frequency Ray Tracing Christiaan Gribble*, SURVICE Engineering Company, USA; Jefferson Amstutz, SURVICE Engineering Company, USA Bioinformatics & Big Data 3 3:00-4:40 in Eden Vale C1 - C2 Chair: Chansup Byun / MIT Lincoln Laboratory Hierarchical Clustering and K-means Analysis of HPC Application Kernels Performance Characteristics M.L. Grodowitz, Sarat Sreepathi, Oak Ridge National Lab Multi-modal Sensor Registration for Vehicle Perception via Deep Neural Networks Michael Giering, Vivek Venugopalan, Kishore Reddy, UTRC A Signals Processing and Big Data Framework for Monte Carlo Aircraft Encounters Andrew Weinert, MIT Lincoln Laboratory A Cloud-based approach to Big Graphs Paul Burkhardt, Chris Waring, DoD